Prepare pasta according to package directions for al dente. Set aside.
Mix cheese together in a large bowl (excluding Parmesan)
In a small bowl add salt, pepper and flour to cold milk, whisk. Set aside.
Spoon 1/3 of the pasta into a lightly greased baking dish (11x15 or 5qt); add dots of butter, top with 1/3 cheese mixture, pour 1/3 milk mixture over cheese (stir each time) – repeat until ingredients are gone.
Top with Parmesan add pepper to taste.
Bake at 350° for 25-30 minutes or until bubbly and slightly brown on the top. Let stand 10 minutes before serving.