Preheat oven to 400 degrees. Lightly coat one side of tortillas with cooking spray; gently pleat and place tortilla sprayed side down, in each of 8 large muffin cups. Bake until crisp, 12-15 minutes; remove and cool.
Meanwhile, coat a nonstick skillet with cooking spray; set over medium-high heat. Add turkey, onion and pepper; cook, breaking up turkey until turkey is cooked through and onions are soft and translucent, about 8 minutes.
Add taco seasoning and chipotle; stir to combine. Add tomatoes, beans, and corn; heat through. Spoon 1 cup filling into each tortilla cup; sprinkle with cheese and cilantro and serve.